Jalview

Built on Java for maximum reliability and cross-platform compatibility, Jalview is a trusted visualization workhorse in bioinformatics. It handles large-scale sequence alignments, extensive annotations, and complex associated data with stability. Its architecture ensures it runs identically on Windows, macOS, and Linux, providing a consistent tool for collaborative research teams. The software supports numerous file formats and offers scripting capabilities for automation, making it a versatile and dependable foundation for a wide range of computational biology analyses.